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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51520612_51521296_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51520612 - 51521296
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AGTTTTTTAATT
Flanking Amino Acid:
GLYIFGDFMSGRLMSLKEDR
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
74.5
0.85
1.1
82.38
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005404
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005593
51510959 - 51528912
17954