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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51521443_51523956_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51521443 - 51523956
Intron Length:
2514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTGTGATCT
Flanking Amino Acid:
YIISFAEDEAGELYFMSTGV
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.8
76.6
36.9
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
42.7
-0.4
2.3
64.8
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005404
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005593
51510959 - 51528912
17954