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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51524039_51525633_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51524039 - 51525633
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCTTTTTTCACA
Flanking Amino Acid:
GVVYKVVDTSRRAPPGKCRV
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.9
0.83
0.7
82.5
26.1
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
56.5
0.2
1.8
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005404
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005593
51510959 - 51528912
17954