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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51540991_51541275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51540991 - 51541275
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TGTACCATAAAT
Flanking Amino Acid:
QELIHDLFLQWSEKYGPVIR
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
61.2
0.43
1.8
80.63
40

Associated Gene:

Gene:
CYP46A1
Ensembl Gene ID:
ENSAPLG00000004778
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004984
51537722 - 51551766
14045