Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5154433_5161790_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5154433 - 5161790

Intron Length:

7358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTAACTGTAAAA

Flanking Amino Acid:

IYKHFTWLKRSQVNHHSSTN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

84.2

0.77

0.7

77.1

31.6

Minor 5ss

-1.8

3.3

40.9

45.4

Minor BPS

49.3

-0

2.1

66.23

39.9

Associated Gene:

Gene:

PPFIBP2

Ensembl Gene ID:

ENSAPLG00000006571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046570

5106740 - 5161838

55099