About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51545288_51545631_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51545288 - 51545631
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTCTAATCT
Flanking Amino Acid:
DILTQILKGDALEETRDDEN
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
66.4
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.9
0.58
1
72
38
Minor 5ss
32.9
-2
3.2
43.7
43.9
Minor BPS
60
0.39
1.9
81.65
40.2

Associated Gene:

Gene:
CYP46A1
Ensembl Gene ID:
ENSAPLG00000004778
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004984
51537722 - 51551766
14045