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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51545695_51546663_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51545695 - 51546663
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AAGCTTTCAACT
Flanking Amino Acid:
LDNFVTFFVAGHETTANQLS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
68.3
42.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
1
80.5
37
Minor 5ss
32
-2.1
2.4
30.6
34.9
Minor BPS
51.6
0.13
1.5
64.95
39.4

Associated Gene:

Gene:
CYP46A1
Ensembl Gene ID:
ENSAPLG00000004778
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004984
51537722 - 51551766
14045