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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51551140_51551530_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51551140 - 51551530
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTCTTCTTAACA
Flanking Amino Acid:
RSCIGQVFAQMEAKVVMAKL
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
71.2
0.53
1
61
37.5
Major PPT
83.9
0.76
0.8
80.8
29.8
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
84.7
1.09
1
86.69
32.1

Associated Gene:

Gene:
CYP46A1
Ensembl Gene ID:
ENSAPLG00000004778
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004984
51537722 - 51551766
14045