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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51556935_51557016_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51556935 - 51557016
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCGG
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CGCCCCTCATCT
Flanking Amino Acid:
QRLRHPGIVQLRGHCLDSGG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
57
47.3
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
36.2
-1.6
3.2
47.2
48.2
Minor BPS
47.8
-0
1.9
62.47
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004582
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004708
51556461 - 51563773
7313