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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51673230_51676245_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51673230 - 51676245
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CCTTCTATAAAA
Flanking Amino Acid:
NACKLKKPALSTVKRTSSTE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
80.2
0.68
0.8
81.4
29
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
54.7
0.14
1.8
65.1
41.5

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018883
51634267 - 51712639
78373