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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51676381_51681517_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51676381 - 51681517
Intron Length:
5137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTATTT
Flanking Amino Acid:
SSSSGKKNSESKPKEPMFSA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.9
0.72
0.8
76.4
37
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
62
0.45
1.9
80.9
41.2

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001