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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51681547_51686141_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51681547 - 51686141
Intron Length:
4595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGACCTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TAACTCTAAACT
Flanking Amino Acid:
SKPKEPMFSAEEGYVKMFLR
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.5
0.55
0.9
68.8
37
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
60.5
0.41
1.7
75.36
40.9

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000004087
51634267 - 51714020
79754