Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51682964_51686141_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51682964 - 51686141

Intron Length:

3178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TGACCTTTTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TAACTCTAAACT

Flanking Amino Acid:

AGKRRVTHCKEEGYVKMFLR

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.2

39.3

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

74.5

0.55

0.9

68.8

Minor 5ss

-0.3

3.1

66.9

44.7

Minor BPS

60.5

0.41

1.7

75.36

40.9

Associated Gene:

Gene:

EML1

Ensembl Gene ID:

ENSAPLG00000003949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040121

51593020 - 51714020

121001

ENSAPLT00000018883

51634267 - 51712639

78373