About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51686272_51690405_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
51686272 - 51690405
Intron Length:
4134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACAAACATGCTAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGCATCTTGACA
Flanking Amino Acid:
LPAKRLKLEWVYGYRGRDCR
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
48.6
-0
1
37.1
39.5
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
63.3
0.41
1.3
67.42
38.8

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000018883
51634267 - 51712639
78373