About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51690556_51692502_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51690556 - 51692502
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAG
U12 Branch Point Sequence:
TGCCTATAAGTT
Flanking Amino Acid:
HYTGHNDDVKCLAVHPDRIT
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
51.5
0.04
1.6
61.7
41.5
Major PPT
85.2
0.79
0.7
84.8
30
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
40.6
-0.6
1.9
54.63
41.4

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754