About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51698649_51700897_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51698649 - 51700897
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCTCCTTATAT
Flanking Amino Acid:
SSGNILVWGKGTNRISHAVQ
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
77.5
0.62
0.9
69.8
39.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
69.3
0.68
1.7
85.22
41.1

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001