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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51701053_51701705_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51701053 - 51701705
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATATCA
5'SS Class:
major
3'SS Sequence:
GTTATGAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CTGTTATGAACA
Flanking Amino Acid:
GNYQKLHKTEIPEQFGPIRT
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.3
30.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
62.2
0.28
1.1
54.8
43.8
Minor 5ss
32.8
-2
3
40
45.5
Minor BPS
52.8
0.08
1.8
64.88
41.5

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001