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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51701832_51702079_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51701832 - 51702079
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCCTTGTTAAGA
Flanking Amino Acid:
LSGDFFPITQGHTDELWGLA
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.8
0.65
0.9
73.7
35.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
48.3
-0.1
2.3
61.69
45.2

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001