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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51702212_51704580_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51702212 - 51704580
Intron Length:
2369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAATT
5'SS Class:
major
3'SS Sequence:
TAAAACATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAAAC
Flanking Amino Acid:
HHPIWNKIIEDPAQSSGFHP
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
79.6
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
61.5
0.26
1
56.6
43.5
Minor 5ss
44.9
-0.6
3
66.2
44.9
Minor BPS
59.5
0.28
1.8
70.75
40.8

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754
ENSAPLT00000040121
51593020 - 51714020
121001