Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51706647_51706762_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51706647 - 51706762

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCATCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTTCTCATCA

Flanking Amino Acid:

RKYTRIGKCSGHSSFITHLD

Intron Amino Acid Position:

670

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

87.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

78.2

0.63

0.8

73.7

29.8

Minor 5ss

37.9

-1.4

2.9

52.2

44.4

Minor BPS

63.8

0.43

1.8

79.26

37.1

Associated Gene:

Gene:

EML1

Ensembl Gene ID:

ENSAPLG00000003949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040121

51593020 - 51714020

121001

ENSAPLT00000022555

51593020 - 51714020

121001

ENSAPLT00000018883

51634267 - 51712639

78373

ENSAPLT00000004087

51634267 - 51714020

79754