Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51706851_51707031_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51706851 - 51707031

Intron Length:

181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGAGTAAA

5'SS Class:

major

3'SS Sequence:

TCTTCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TTTTTCTTCTTT

Flanking Amino Acid:

SNSGDYEILYWIPSACKQVV

Intron Amino Acid Position:

699

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

72.6

33.5

Major BPS

73.8

0.59

0.9

26.8

Major PPT

87.8

0.85

0.6

84.4

23.4

Minor 5ss

32.5

-2

2.8

43.1

43.9

Minor BPS

-0.2

3.6

82.89

39.2

Associated Gene:

Gene:

EML1

Ensembl Gene ID:

ENSAPLG00000003949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018883

51634267 - 51712639

78373

ENSAPLT00000004087

51634267 - 51714020

79754

ENSAPLT00000040121

51593020 - 51714020

121001

ENSAPLT00000022555

51593020 - 51714020

121001