About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51707128_51712107_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51707128 - 51712107
Intron Length:
4980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AAACACTTAATT
Flanking Amino Acid:
YTCTLGFHVFGVWPEGSDGT
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
79.7
0.67
0.9
76.5
37.3
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
61.1
0.43
1.5
71.71
38.4

Associated Gene:

Gene:
EML1
Ensembl Gene ID:
ENSAPLG00000003949
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040121
51593020 - 51714020
121001
ENSAPLT00000022555
51593020 - 51714020
121001
ENSAPLT00000018883
51634267 - 51712639
78373
ENSAPLT00000004087
51634267 - 51714020
79754