Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51712239_51712513_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51712239 - 51712513

Intron Length:

275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TGGTGTTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTCACTAATA

Flanking Amino Acid:

LFSYPCSQFRAPSHVYGGHS

Intron Amino Acid Position:

775

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

69.6

42.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

74.1

0.54

65.8

45.3

Minor 5ss

-2.1

3.4

39.2

46.1

Minor BPS

57.5

0.23

1.9

73.29

38.6

Associated Gene:

Gene:

EML1

Ensembl Gene ID:

ENSAPLG00000003949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040121

51593020 - 51714020

121001

ENSAPLT00000022555

51593020 - 51714020

121001

ENSAPLT00000018883

51634267 - 51712639

78373

ENSAPLT00000004087

51634267 - 51714020

79754