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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5175348_5191874_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5175348 - 5191874
Intron Length:
16527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TCTCTTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTCTTTAAAAT
Flanking Amino Acid:
ALEQMDDIIAGTKSAAEYAN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
73.4
0.53
0.9
72.8
37.5
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
49.9
0.07
1.8
69.62
41.7

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233