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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51797418_51797737_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51797418 - 51797737
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
MALLANSEQSICQARA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003748
51797398 - 51864440
67043