About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51797907_51803980_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51797907 - 51803980
Intron Length:
6074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCTTTCATA
Flanking Amino Acid:
VVGVKLQDQQVVINYSIVKG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
0.9
73.1
35.6
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
64.2
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000045987
51790149 - 51861119
70971
ENSAPLT00000040535
51744797 - 51861119
116323
ENSAPLT00000031994
51769056 - 51861119
92064
ENSAPLT00000003752
51722680 - 51865009
142330
ENSAPLT00000047688
51722680 - 51865009
142330