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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51804159_51844563_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51804159 - 51844563
Intron Length:
40405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATCAT
U12 Branch Point Sequence:
TTTCCCAGCATC
Flanking Amino Acid:
ALNIMNSQDGGPAAQRQVQN
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
57.9
0.2
1.4
62
44.2
Major PPT
82.6
0.73
0.7
78.1
30.8
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
46.4
-0.3
2.1
65.96
39.4

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040535
51744797 - 51861119
116323
ENSAPLT00000031994
51769056 - 51861119
92064
ENSAPLT00000003752
51722680 - 51865009
142330
ENSAPLT00000047688
51722680 - 51865009
142330
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000045987
51790149 - 51861119
70971