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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51844628_51848679_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51844628 - 51848679
Intron Length:
4052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GAATACATAATG
Flanking Amino Acid:
PSPDEMEAQRRQVMEQQQQR
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
48.2
-0.2
1.8
52.88
41.1

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031994
51769056 - 51861119
92064
ENSAPLT00000003752
51722680 - 51865009
142330
ENSAPLT00000047688
51722680 - 51865009
142330
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000045987
51790149 - 51861119
70971
ENSAPLT00000040535
51744797 - 51861119
116323