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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51853034_51853472_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51853034 - 51853472
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTCTGTCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTCTCCTTAATT
Flanking Amino Acid:
AGAKLRRVQRPEDGSGGSSP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
64.3
47.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
75.5
0.57
1
79.5
32.8
Minor 5ss
31.2
-2.1
3.1
31.4
42.5
Minor BPS
89
1.3
0.9
95.75
31

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003752
51722680 - 51865009
142330
ENSAPLT00000047688
51722680 - 51865009
142330
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000045987
51790149 - 51861119
70971
ENSAPLT00000040535
51744797 - 51861119
116323
ENSAPLT00000031994
51769056 - 51861119
92064