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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51859195_51860561_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51859195 - 51860561
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
TTCTTTTTTACA
Flanking Amino Acid:
GPTQQQQNSSDSGKKPWERS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
94.8
1.01
0.6
90.9
21.3
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
64.3
0.44
1.6
74.15
37.7

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040535
51744797 - 51861119
116323
ENSAPLT00000031994
51769056 - 51861119
92064
ENSAPLT00000003752
51722680 - 51865009
142330
ENSAPLT00000047688
51722680 - 51865009
142330
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000045987
51790149 - 51861119
70971