About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51860629_51860734_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51860629 - 51860734
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTCGTTTCATT
Flanking Amino Acid:
VEKPVSSLLSRNPSVVKSCE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.7
0.47
0.9
65.3
36.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47.4
-0.1
2.1
68.31
43.6

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045987
51790149 - 51861119
70971
ENSAPLT00000040535
51744797 - 51861119
116323
ENSAPLT00000031994
51769056 - 51861119
92064
ENSAPLT00000003748
51797398 - 51864440
67043
ENSAPLT00000047688
51722680 - 51865009
142330