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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51860629_51862860_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51860629 - 51862860
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CCCTTTTTCAAG
Flanking Amino Acid:
VEKPVSSLLSRMKPVSSSND
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.2
0.57
1
74.1
34.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
43.8
-0.6
1.9
42.62
43.5

Associated Gene:

Gene:
EVL
Ensembl Gene ID:
ENSAPLG00000003632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003752
51722680 - 51865009
142330