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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51876553_51884443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51876553 - 51884443
Intron Length:
7891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTCGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCTGCATT
Flanking Amino Acid:
PHTQRRKEILAKYPEIKTLM
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
54.7
49.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
32.1
-2
3
32.4
42.2
Minor BPS
52.7
0.17
1.9
77.82
38.8

Associated Gene:

Gene:
DEGS2
Ensembl Gene ID:
ENSAPLG00000003616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003690
51869170 - 51884525
15356