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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51963854_51966823_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51963854 - 51966823
Intron Length:
2970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TATACCATAAAA
Flanking Amino Acid:
TDTPKQIKTKINKHAFSGGR
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
81
0.7
0.9
72.6
42.2
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
59.4
0.29
1.8
72.45
38.3

Associated Gene:

Gene:
WARS1
Ensembl Gene ID:
ENSAPLG00000002940
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002999
51961597 - 51978208
16612