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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51966998_51967935_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51966998 - 51967935
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CATTTCTCAACT
Flanking Amino Acid:
QCLIPCAIDQDPYFRMTRDV
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.8
0.72
0.9
73.7
40.6
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
68.7
0.67
1.5
81.1
40.5

Associated Gene:

Gene:
WARS1
Ensembl Gene ID:
ENSAPLG00000002940
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002999
51961597 - 51978208
16612