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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51968049_51969259_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51968049 - 51969259
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAAAT
5'SS Class:
major
3'SS Sequence:
TCTTATGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCCAAACT
Flanking Amino Acid:
IFGFTDSDCIGKISFPAIQA
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
73.4
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.2
0.61
0.9
69.4
41.4
Minor 5ss
33.9
-1.8
3.3
45.4
44
Minor BPS
56.3
0.28
2
79.84
42.4

Associated Gene:

Gene:
WARS1
Ensembl Gene ID:
ENSAPLG00000002940
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002999
51961597 - 51978208
16612