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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51970786_51971685_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51970786 - 51971685
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
TTTTCCTTTGTT
Flanking Amino Acid:
FLRRGIFFSHRDMDQILHAY
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
48.6
-0
3.6
87.87
37.8

Associated Gene:

Gene:
WARS1
Ensembl Gene ID:
ENSAPLG00000002940
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002999
51961597 - 51978208
16612