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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51984253_52018125_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51984253 - 52018125
Intron Length:
33873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTCCTTATCT
Flanking Amino Acid:
LSASMDKTIKIWNAVDTGCC
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.5
0.64
0.9
83.2
25.7
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
78.8
0.98
1.5
91.94
37.5

Associated Gene:

Gene:
WDR25
Ensembl Gene ID:
ENSAPLG00000002890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002917
51983478 - 52045987
62510