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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52068367_52068489_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52068367 - 52068489
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
CTTTGTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTCTTTGTATT
Flanking Amino Acid:
AITLVKEPYMLPSDFQERVS
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
72.8
34.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.3
0.75
0.9
77.5
35.5
Minor 5ss
40.2
-1.1
3.1
52.2
46
Minor BPS
46.9
-0.1
1.7
65.05
40.4

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017767
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360
ENSAPLT00000045612
52067014 - 52227375
160362