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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52068538_52071583_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52068538 - 52071583
Intron Length:
3046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
CATTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAAAATTAATT
Flanking Amino Acid:
NYDRAHKLSEKCTEIVAITL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.5
0.75
0.9
80.5
36.7
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
51.7
0.13
1.8
70.91
39.3

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045612
52067014 - 52227375
160362
ENSAPLT00000017767
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360