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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52071668_52075070_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52071668 - 52075070
Intron Length:
3403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
VTIDKLSEDNELYRKDCNLA
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018409
52067014 - 52227375
160362
ENSAPLT00000017767
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360
ENSAPLT00000045612
52067014 - 52227375
160362