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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52075179_52120437_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52075179 - 52120437
Intron Length:
45259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTTCTTCATA
Flanking Amino Acid:
QDLEDKLYRMGQHYEEEKRA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.4
0.71
0.7
77.1
31
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
65.9
0.5
1.7
76.94
34.3

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017767
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360
ENSAPLT00000045612
52067014 - 52227375
160362
ENSAPLT00000018409
52067014 - 52227375
160362