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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52120505_52126574_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52120505 - 52126574
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AATACATGAAAT
Flanking Amino Acid:
ELEKVTEKLRRIQNNYLALQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82.9
0.74
0.8
81.7
35.4
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
48.8
-0
1.8
68.9
40.5

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018409
52067014 - 52227375
160362
ENSAPLT00000017767
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360
ENSAPLT00000045612
52067014 - 52227375
160362