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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52126737_52141770_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52126737 - 52141770
Intron Length:
15034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
AATTCTACAGCT
Flanking Amino Acid:
LAKSSPTLWDSTLQEQKGEL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
47.1
-0.1
2
69.28
41.2

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045612
52067014 - 52227375
160362
ENSAPLT00000018409
52067014 - 52227375
160362
ENSAPLT00000002914
52067014 - 52181373
114360