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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52126737_52180673_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52126737 - 52180673
Intron Length:
53937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
AATTCTACAGCT
Flanking Amino Acid:
KASAAEMEKISTLQEQKGEL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
47.1
-0.1
2
69.28
41.2

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017767
52067014 - 52227375
160362