Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52141861_52180673_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52141861 - 52180673

Intron Length:

38813

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCATGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTATCCTCTATT

Flanking Amino Acid:

QASAAEMEKIRVRNSWVPTC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.4

32.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

73.4

0.53

66.3

39.8

Minor 5ss

-2.1

3.1

39.6

46.4

Minor BPS

61.3

0.44

1.9

81.29

40.2

Associated Gene:

Gene:

BEGAIN

Ensembl Gene ID:

ENSAPLG00000002887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045612

52067014 - 52227375

160362

ENSAPLT00000018409

52067014 - 52227375

160362

ENSAPLT00000002914

52067014 - 52181373

114360