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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52180703_52223486_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52180703 - 52223486
Intron Length:
42784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTATTTGATT
Flanking Amino Acid:
KHFEDSLTVKASAAEMEKIS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.8
0.65
0.9
74.1
36.4
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
65.8
0.58
1.4
80.61
35.1

Associated Gene:

Gene:
BEGAIN
Ensembl Gene ID:
ENSAPLG00000002887
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045612
52067014 - 52227375
160362
ENSAPLT00000018409
52067014 - 52227375
160362
ENSAPLT00000017767
52067014 - 52227375
160362