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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5224313_5227345_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5224313 - 5227345
Intron Length:
3033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTTCCTTACAG
Flanking Amino Acid:
KRKLKLVLNASCDHMLAGVK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
31.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
32.4
-2
3.3
40
39.8
Minor BPS
63.1
0.27
1.8
69.63
43.2

Associated Gene:

Gene:
OLFML1
Ensembl Gene ID:
ENSAPLG00000006707
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006962
5223534 - 5228723
5190