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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52246663_52272399_F

Intron Information:

Intron Rank:
143381
Intron Class:
major
Intron Phase:
Intron Coordinates:
52246663 - 52272399
Intron Length:
25737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TGACACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
86.7
0.83
0.7
84.6
30.3
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
49
0
1.7
67.49
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027255
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038488
52246556 - 52273573
27018