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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52369748_52370602_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52369748 - 52370602
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATATTAACG
Flanking Amino Acid:
LLPLVLPAAPGVNCKTGCHP
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
58.5
0.13
1.7
64.99
42.6

Associated Gene:

Gene:
DLK1
Ensembl Gene ID:
ENSAPLG00000002648
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046734
52369230 - 52379904
10675